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#
# Cython patcher
#
# Copyright (C) 2012-2024 Michael Buesch <m@bues.ch>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
from __future__ import print_function
import sys
import os
import platform
import errno
import shutil
import hashlib
import re
WORKER_MEM_BYTES = 800 * 1024*1024
WORKER_CPU_OVERCOMMIT = 2
setupFileName = "setup.py"
parallelBuild = False
profileEnabled = False
debugEnabled = False
ext_modules = []
CythonBuildExtension = None
patchDirName = "cython_patched.%s-%s-%d.%d" % (
platform.system().lower(),
platform.machine().lower(),
sys.version_info[0],
sys.version_info[1])
_Cython_Distutils_build_ext = None
_cythonPossible = None
_cythonBuildUnits = []
_isWindows = os.name.lower() in {"nt", "ce"}
_isPosix = os.name.lower() == "posix"
def getSystemMemBytesCount():
try:
with open("/proc/meminfo", "rb") as fd:
for line in fd.read().decode("UTF-8", "ignore").splitlines():
if line.startswith("MemTotal:") and\
line.endswith("kB"):
kB = int(line.split()[1], 10)
return kB * 1024
except (OSError, IndexError, ValueError, UnicodeError) as e:
pass
if hasattr(os, "sysconf"):
try:
return os.sysconf("SC_PAGE_SIZE") * os.sysconf("SC_PHYS_PAGES")
except ValueError as e:
pass
return None
def makedirs(path, mode=0o755):
try:
os.makedirs(path, mode)
except OSError as e:
if e.errno == errno.EEXIST:
return
raise e
def hashFile(path):
try:
with open(path, "rb") as fd:
return hashlib.sha1(fd.read()).hexdigest()
except FileNotFoundError as e:
return None
def __fileopIfChanged(fromFile, toFile, fileops):
toFileHash = hashFile(toFile)
if toFileHash is not None:
fromFileHash = hashFile(fromFile)
if toFileHash == fromFileHash:
return False
makedirs(os.path.dirname(toFile))
for fileop in fileops:
fileop(fromFile, toFile)
return True
def removeFile(filename):
try:
os.unlink(filename)
except OSError:
pass
def copyIfChanged(fromFile, toFile):
fileops = []
if _isWindows:
fileops.append(lambda _fromFile, _toFile: removeFile(_toFile))
fileops.append(shutil.copy2)
return __fileopIfChanged(fromFile, toFile, fileops)
def moveIfChanged(fromFile, toFile):
fileops = []
if _isWindows:
fileops.append(lambda _fromFile, _toFile: removeFile(_toFile))
fileops.append(os.rename)
return __fileopIfChanged(fromFile, toFile, fileops)
def makeDummyFile(path):
if os.path.isfile(path):
return
print("creating dummy file '%s'" % path)
makedirs(os.path.dirname(path))
with open(path, "wb") as fd:
fd.write("\n".encode("UTF-8"))
def pyCythonPatchLine(line):
return line
def pyCythonPatch(fromFile, toFile):
print("cython-patch: patching file '%s' to '%s'" %\
(fromFile, toFile))
tmpFile = toFile + ".TMP"
makedirs(os.path.dirname(tmpFile))
with open(fromFile, "rb") as infd,\
open(tmpFile, "wb") as outfd:
for line in infd.read().decode("UTF-8").splitlines(True):
stripLine = line.strip()
if stripLine.endswith("#@no-cython-patch"):
outfd.write(line.encode("UTF-8"))
continue
# Replace import by cimport as requested by #+cimport
if "#+cimport" in stripLine:
line = line.replace("#+cimport", "#")
line = re.sub(r'\bimport\b', "cimport", line)
# Convert None to NULL
if "#+NoneToNULL" in stripLine:
line = line.replace("#+NoneToNULL", "#")
line = re.sub(r'\bNone\b', "NULL", line)
# Uncomment all lines containing #@cy
def uncomment(line, removeStr):
line = line.replace(removeStr, "")
if line.startswith("#"):
line = line[1:]
if not line.endswith("\n"):
line += "\n"
return line
if "#@cy-posix" in stripLine:
if _isPosix:
line = uncomment(line, "#@cy-posix")
elif "#@cy-win" in stripLine:
if _isWindows:
line = uncomment(line, "#@cy-win")
elif "#@cy" in stripLine:
line = uncomment(line, "#@cy")
# Sprinkle magic cdef/cpdef, as requested by #+cdef/#+cpdef
if "#+cdef-" in stripLine:
# +cdef-foo-bar is the extended cdef patching.
# It adds cdef and any additional characters to the
# start of the line. Dashes are replaced with spaces.
# Get the additional text
idx = line.find("#+cdef-")
cdefText = line[idx+2 : ]
cdefText = cdefText.replace("-", " ").rstrip("\r\n")
# Get the initial space length
spaceCnt = 0
while spaceCnt < len(line) and line[spaceCnt].isspace():
spaceCnt += 1
# Construct the new line
line = line[ : spaceCnt] + cdefText + " " + line[spaceCnt : ]
elif "#+cdef" in stripLine:
# Simple cdef patching:
# def -> cdef
# class -> cdef class
if stripLine.startswith("class"):
line = re.sub(r'\bclass\b', "cdef class", line)
else:
line = re.sub(r'\bdef\b', "cdef", line)
if "#+cpdef" in stripLine:
# Simple cpdef patching:
# def -> cpdef
line = re.sub(r'\bdef\b', "cpdef", line)
# Add likely()/unlikely() to if-conditions.
for likely in ("likely", "unlikely"):
if "#+" + likely in stripLine:
line = re.sub(r'\bif\s(.*):', r'if ' + likely + r'(\1):', line)
break
# Add an "u" suffix to decimal and hexadecimal numbers.
if "#+suffix-u" in line or "#+suffix-U" in line:
line = re.sub(r'\b([0-9]+)\b', r'\1u', line)
line = re.sub(r'\b(0x[0-9a-fA-F]+)\b', r'\1u', line)
# Add an "LL" suffix to decimal and hexadecimal numbers.
if "#+suffix-ll" in line or "#+suffix-LL" in line:
line = re.sub(r'\b(\-?[0-9]+)\b', r'\1LL', line)
line = re.sub(r'\b(0x[0-9a-fA-F]+)\b', r'\1LL', line)
# Comment all lines containing #@nocy
if "#@nocy" in stripLine:
line = "#" + line
# Comment all lines containing #@cy-posix/win
# for the not matching platform.
if _isPosix:
if "#@cy-win" in stripLine:
line = "#" + line
elif _isWindows:
if "#@cy-posix" in stripLine:
line = "#" + line
# Remove compat stuff
line = line.replace("absolute_import,", "")
line = pyCythonPatchLine(line)
outfd.write(line.encode("UTF-8"))
outfd.flush()
if moveIfChanged(tmpFile, toFile):
print("(updated)")
else:
os.unlink(tmpFile)
class CythonBuildUnit(object):
def __init__(self, cyModName, baseName, fromPy, fromPxd, toDir, toPyx, toPxd):
self.cyModName = cyModName
self.baseName = baseName
self.fromPy = fromPy
self.fromPxd = fromPxd
self.toDir = toDir
self.toPyx = toPyx
self.toPxd = toPxd
def patchCythonModules(buildDir):
for unit in _cythonBuildUnits:
makedirs(unit.toDir)
makeDummyFile(os.path.join(unit.toDir, "__init__.py"))
if unit.baseName == "__init__":
# Copy and patch the package __init__.py
toPy = os.path.join(buildDir, *unit.cyModName.split(".")) + ".py"
pyCythonPatch(unit.fromPy, toPy)
else:
# Generate the .pyx
pyCythonPatch(unit.fromPy, unit.toPyx)
# Copy and patch the .pxd, if any
if os.path.isfile(unit.fromPxd):
pyCythonPatch(unit.fromPxd, unit.toPxd)
def registerCythonModule(baseDir, sourceModName):
global ext_modules
global _cythonBuildUnits
modDir = os.path.join(baseDir, sourceModName)
# Make path to the cython patch-build-dir
patchDir = os.path.join(baseDir, "build", patchDirName,
("%s_cython" % sourceModName))
if not os.path.exists(os.path.join(baseDir, setupFileName)) or\
not os.path.exists(modDir) or\
not os.path.isdir(modDir):
raise Exception("Wrong directory. "
"Execute setup.py from within the main directory.")
# Walk the module
for dirpath, dirnames, filenames in os.walk(modDir):
subpath = os.path.relpath(dirpath, modDir)
if subpath == baseDir:
subpath = ""
dirpathList = dirpath.split(os.path.sep)
if any(os.path.exists(os.path.sep.join(dirpathList[:i] + ["no_cython"]))
for i in range(len(dirpathList) + 1)):
# no_cython file exists. -> skip
continue
for filename in filenames:
if filename.endswith(".py"):
fromSuffix = ".py"
elif filename.endswith(".pyx.in"):
fromSuffix = ".pyx.in"
else:
continue
baseName = filename[:-len(fromSuffix)] # Strip .py/.pyx.in
fromPy = os.path.join(dirpath, baseName + fromSuffix)
fromPxd = os.path.join(dirpath, baseName + ".pxd.in")
toDir = os.path.join(patchDir, subpath)
toPyx = os.path.join(toDir, baseName + ".pyx")
toPxd = os.path.join(toDir, baseName + ".pxd")
# Construct the new cython module name
cyModName = [ "%s_cython" % sourceModName ]
if subpath:
cyModName.extend(subpath.split(os.sep))
cyModName.append(baseName)
cyModName = ".".join(cyModName)
# Remember the filenames for the build
unit = CythonBuildUnit(cyModName, baseName, fromPy, fromPxd,
toDir, toPyx, toPxd)
_cythonBuildUnits.append(unit)
if baseName != "__init__":
# Create a distutils Extension for the module
extra_compile_args = []
extra_link_args = []
if not _isWindows:
extra_compile_args.append("-Wall")
extra_compile_args.append("-Wextra")
extra_compile_args.append("-Wcast-qual")
extra_compile_args.append("-Wlogical-op")
extra_compile_args.append("-Wpointer-arith")
extra_compile_args.append("-Wundef")
extra_compile_args.append("-Wno-cast-function-type")
extra_compile_args.append("-Wno-maybe-uninitialized")
extra_compile_args.append("-Wno-type-limits")
if debugEnabled:
# Enable debugging and UBSAN.
extra_compile_args.append("-g3")
extra_compile_args.append("-fsanitize=undefined")
extra_compile_args.append("-fsanitize=float-divide-by-zero")
extra_compile_args.append("-fsanitize=float-cast-overflow")
extra_compile_args.append("-fno-sanitize-recover")
extra_link_args.append("-lubsan")
else:
# Disable all debugging symbols.
extra_compile_args.append("-g0")
extra_link_args.append("-Wl,--strip-all")
ext_modules.append(
_Cython_Distutils_Extension(
cyModName,
[toPyx],
cython_directives={
# Enable profile hooks?
"profile" : profileEnabled,
"linetrace" : profileEnabled,
# Warn about unused variables?
"warn.unused" : False,
# Set language version
"language_level" : 3,
},
define_macros=[
("CYTHON_TRACE", str(int(profileEnabled))),
("CYTHON_TRACE_NOGIL", str(int(profileEnabled))),
],
include_dirs=[
os.path.join("libs", "cython_headers"),
],
extra_compile_args=extra_compile_args,
extra_link_args=extra_link_args
)
)
def registerCythonModules(baseDir=None):
if baseDir is None:
baseDir = os.curdir
for filename in os.listdir(baseDir):
if os.path.isdir(os.path.join(baseDir, filename)) and\
os.path.exists(os.path.join(baseDir, filename, "__init__.py")) and\
not os.path.exists(os.path.join(baseDir, filename, "no_cython")):
registerCythonModule(baseDir, filename)
def cythonBuildPossible():
global _cythonPossible
if _cythonPossible is not None:
return _cythonPossible
_cythonPossible = False
if sys.version_info[0] < 3:
print("WARNING: Could not build the CYTHON modules: "
"Cython 2 not supported. Please use Cython 3.")
return False
try:
import Cython.Compiler.Options
# Omit docstrings in cythoned modules.
Cython.Compiler.Options.docstrings = False
# Generate module exit cleanup code.
Cython.Compiler.Options.generate_cleanup_code = True
# Generate HTML outputs.
Cython.Compiler.Options.annotate = True
from Cython.Distutils import build_ext, Extension
global _Cython_Distutils_build_ext
global _Cython_Distutils_Extension
_Cython_Distutils_build_ext = build_ext
_Cython_Distutils_Extension = Extension
except ImportError as e:
print("WARNING: Could not build the CYTHON modules: "
"%s" % str(e))
print("--> Is Cython installed?")
return False
_cythonPossible = True
return True
def cyBuildWrapper(arg):
# This function does the same thing as the for-loop-body
# inside of Cython's build_ext.build_extensions() method.
# It is called via multiprocessing to build extensions
# in parallel.
# Note that this might break, if Cython's build_extensions()
# is changed and stuff is added to its for loop. Meh.
self, ext = arg
ext.sources = self.cython_sources(ext.sources, ext)
self.build_extension(ext)
if cythonBuildPossible():
# Override Cython's build_ext class.
class CythonBuildExtension(_Cython_Distutils_build_ext):
class Error(Exception): pass
def build_extension(self, ext):
assert(not ext.name.endswith("__init__"))
_Cython_Distutils_build_ext.build_extension(self, ext)
def build_extensions(self):
global parallelBuild
# First patch the files, the run the build
patchCythonModules(self.build_lib)
# FIXME: Parallel build currently does not work on Cython 3.x
parallelBuild = False
if parallelBuild:
# Run the parallel build, yay.
try:
self.check_extensions_list(self.extensions)
# Calculate the number of worker processes to use.
memBytes = getSystemMemBytesCount()
if memBytes is None:
raise self.Error("Unknown system memory size")
print("System memory detected: %d MB" % (memBytes // (1024*1024)))
memProcsMax = memBytes // WORKER_MEM_BYTES
if memProcsMax < 2:
raise self.Error("Not enough system memory")
import multiprocessing
numProcs = min(multiprocessing.cpu_count() + WORKER_CPU_OVERCOMMIT,
memProcsMax)
# Start the worker pool.
print("Building in parallel with %d workers." % numProcs)
from multiprocessing.pool import Pool
Pool(numProcs).map(cyBuildWrapper,
((self, ext) for ext in self.extensions))
except (OSError, self.Error) as e:
# OSError might happen in a restricted
# environment like chroot.
print("WARNING: Parallel build "
"disabled due to: %s" % str(e))
parallelBuild = False
if not parallelBuild:
# Run the normal non-parallel build.
_Cython_Distutils_build_ext.build_extensions(self)
|